Package: coreCollection 0.9.5

Matthijs Brouwer

coreCollection: Core Collection

Create a custom sized Core Collection based on a distance matrix and applying the A-NE (accession nearest entry), E-NE (entry nearest entry) or E-E (entry entry) method as introduced in Jansen and van Hintum (2007) <doi:10.1007/s00122-006-0433-9> and further elaborated on in Odong, T.L. (2012) <https://edepot.wur.nl/212422>. Optionally a list of preselected accessions to be included into the core can be set. For each accession in the computed core, if available nearby accessions are retrievable that can be used as an alternative.

Authors:Matthijs Brouwer [aut, cre], Reinhoud Blok, de [ctb]

coreCollection_0.9.5.tar.gz
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coreCollection.pdf |coreCollection.html
coreCollection/json (API)

# Install 'coreCollection' in R:
install.packages('coreCollection', repos = c('https://pbr.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pbr/corecollection/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

2.70 score 1 scripts 203 downloads 1 exports 2 dependencies

Last updated 2 years agofrom:c45e8ccf32. Checks:7 OK, 4 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 12 2025
R-4.5-win-x86_64NOTEFeb 12 2025
R-4.5-mac-x86_64NOTEFeb 12 2025
R-4.5-mac-aarch64NOTEFeb 12 2025
R-4.5-linux-x86_64NOTEFeb 12 2025
R-4.4-win-x86_64OKFeb 12 2025
R-4.4-mac-x86_64OKFeb 12 2025
R-4.4-mac-aarch64OKFeb 12 2025
R-4.3-win-x86_64OKFeb 12 2025
R-4.3-mac-x86_64OKFeb 12 2025
R-4.3-mac-aarch64OKFeb 12 2025

Exports:CoreCollection

Dependencies:R6Rcpp

Readme and manuals

Help Manual

Help pageTopics
The coreCollection packagecoreCollection-package coreCollection
The CoreCollection classCoreCollection